Examples
========

Jupyter Notebook Examples by Model
------------------------------------

Consumer Resource Model (CRM)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

.. toctree::
   :maxdepth: 2

   notebooks/CRM/examples-bayes-CRM
   notebooks/CRM/examples-sim-CRM

Gaussian Processes (GP)
~~~~~~~~~~~~~~~~~~~~~~~

.. toctree::
   :maxdepth: 2

   notebooks/GP/examples-impute-GP
   notebooks/GP/examples-impute-GP_Stein

Multivariate Autoregressive Model (MVAR)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

.. toctree::
   :maxdepth: 2

   notebooks/MVAR/examples-infer-MVAR
   notebooks/MVAR/examples-sim-MVAR

Multi-Model Analysis
~~~~~~~~~~~~~~~~~~~~

.. toctree::
   :maxdepth: 2

   notebooks/MultiModel/Herold/examples-Herold-VAR
   notebooks/MultiModel/Herold/examples-Herold-sVAR
   notebooks/MultiModel/Herold/examples_impute_data

Vector Autoregression (VAR)
~~~~~~~~~~~~~~~~~~~~~~~~~~~

.. toctree::
   :maxdepth: 2

   notebooks/VAR/examples-bayes-VAR
   notebooks/VAR/examples-sim-VAR

Generalized Lotka-Volterra (gLV)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

.. toctree::
   :maxdepth: 2

   notebooks/gLV/examples-Rutter-Dekker
   notebooks/gLV/examples-Stein
   notebooks/gLV/examples-bayes-gLV
   notebooks/gLV/examples-lasso-gLV
   notebooks/gLV/examples-ridge-gLV
   notebooks/gLV/examples-sim-gLV

Generalized Metabolic Lotka-Volterra (gMLV)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

.. toctree::
   :maxdepth: 2

   notebooks/gMLV/examples-ridge-lasso-gMLV
   notebooks/gMLV/examples-sim-gMLV