Modelling and Inference of MICrobiomes Project (MIMIC)

Contents:

• Modelling and Inference of MICrobiomes Project (MIMIC)
  • Overview
  • Structure
  • Installation
    • Prerequisites
    • Installation Steps
    • Alternative Installation Using Pip Only
  • Usage
  • Contributing
  • License
  • Acknowledgements
  • Contact
• Installation
  • Prerequisites
  • Installation Steps
    • For macOS and Ubuntu
    • For Windows
  • Alternative Installation Using Pip Only
    • Compilers
• Usage
• mimic
  • mimic package
    • Subpackages
    • Module contents
• Examples
  • Jupyter Notebook Examples by Model
    • Consumer Resource Model (CRM)
    • Gaussian Processes (GP)
    • Multivariate Autoregressive Model (MVAR)
    • Multi-Model Analysis
    • Vector Autoregression (VAR)
    • Generalized Lotka-Volterra (gLV)
    • Generalized Metabolic Lotka-Volterra (gMLV)
• Credits
  • Development Lead
  • Contributors
• Contributing to MIMIC
  • Getting Started
  • Making Changes
  • Pull Request Checklist
  • Development Workflow
  • Code Review Process
  • Reporting Bugs
  • Suggesting Enhancements
  • Common Issues:
  • Additional Notes
• History
  • 0.1.0 (2024-01-30)

Indices and tables

• Index

• Module Index

• Search Page