mimic.utilities package

Submodules

mimic.utilities.utilities module

mimic.utilities.utilities.compare_params(**kwargs)

Compare inferred and observed parameters with any parameter name.

Parameters:

**kwargsEach argument should be a tuple of (true_value, predicted_value)

where true_value and predicted_value are numpy arrays

mimic.utilities.utilities.plot_CRM(observed_species, observed_resources, timepoints, csv_file=None)

mimic.utilities.utilities.plot_CRM_with_intervals(observed_species, observed_resources, species_lower, species_upper, resource_lower, resource_upper, times, filename=None)

mimic.utilities.utilities.plot_fit_gLV(yobs, yobs_h, timepoints)

mimic.utilities.utilities.plot_fit_gMLV(yobs, yobs_h, sobs, sobs_h, timepoints)

mimic.utilities.utilities.plot_gLV(yobs, timepoints)

mimic.utilities.utilities.plot_gMLV(yobs, sobs, timepoints)

mimic.utilities.utilities.read_parameters(json_file)

mimic.utilities.utilities.set_all_seeds(seed)

Module contents